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Here's another idea I wanted to toss into the ring:

Doxygen support for Lua.

This comes in two flavors:
- Being able to parse Lua code for comments and generate documentation from it
- Being able to parse C/C++ (or host) code for Lua interfaces and
generate documentation for those interfaces without documenting all
the other host code. This is useful when you want to document your Lua
public API in code, but don't want to clutter the docs with host code
implementation details (which might also be proprietary).